Tutorials

Use a tutorial after the quick start to complete one reproducible analysis from input setup through inspection and export. Choose the tutorial that matches the question you are asking.

Tutorial	Use it when you need to…	You will define…
Pore tutorial: gramicidin A	Measure one known channel	A pore point and direction
Tunnel tutorial: cholesterol oxidase	Find routes from a buried site	A buried origin, then optional automatic origins

Both examples use structures included with VMDHole. After completing one, continue to the matching workflow guide for other controls, trajectory operation, and additional views.